Those values helped a TON. I updated the zonerect for Tombs of Night, floor 1; run the auto-updater and let me know if that fixed it in-game.
If I can get similar info for every map, I can get them fixed up. I need to get a post up giving people instructions to get and submit the 4 sets of numbers you posted above. It takes like 5 minutes to align a map when we have those values to work with.