It sounds like you have "click-through enabled" on those two windows. If you have any spells maintained on yourself, right-click on the spell icon in each window and choose "window settings." Make sure the window is UNlocked and that click-through is NOT enabled.
Another tip: If you press F10 once, it will bring all visible windows' backgrounds to 100% opacity. (Pressing again will hide all UI windows; pressing a third time will restore your UI to normal view.) Being able to see where the edges of those windows are actually located should help you resize and move them a bit easier.
Hope this helps.
