What actually happened to them is that they were in the original releases. But since we converted to the auto updater, only the POIs in the database are in the maps now. You can probably deduce that these old commonlands POIs are not in the database on the site as of now. We tried our best to get in all that we could from the old mod, and are still working on it though without much effort as we have more critical points of the mod to attend to.
You can help us and everyone else out by submitting them to the website and getting them back into the game.
http://maps.eq2interface.com/submitpoi.php
Thanks